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Creators/Authors contains: "Smith, Nathan"

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  1. Abstract Fossil data are subject to inherent biological, geologic, and anthropogenic filters that can distort our interpretations of ancient life and environments. The inevitable presence of incomplete fossils thus requires a holistic assessment of how to navigate the downstream effects of bias on our ability to accurately reconstruct aspects of biology in deep time. In particular, we must assess how biases affect our capacity to infer evolutionary relationships, which are essential to analyses of diversification, paleobiogeography, and biostratigraphy in Earth history. In this study, we use an established completeness metric to quantify the effects of taphonomic filters on the amount of phylogenetic information available in the fossil record of 795 extinct squamate (e.g., lizards, snakes, amphisbaenians, and mosasaurs) species spanning 242 Myr of geologic time. This study found no meaningful relationship between spatiotemporal sampling intensity and fossil record completeness. Instead, major differences in squamate fossil record completeness stem from a combination of anatomy/body size and affinities of different squamate groups to specific lithologies and depositional environments. These results reveal that naturally occurring processes create structural megabiases that filter anatomical and phylogenetic data in the squamate fossil record, while anthropogenic processes play a secondary role. 
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    Free, publicly-accessible full text available August 1, 2026
  2. Monstersauria (Squamata, Anguimorpha) fossils are present in most Upper Cretaceous sedimentary basins in western North America, but despite almost a century of collection, their record remains extremely fragmentary. Here, we describe new material belonging to large-bodied monstersaurs, including a new taxon,Bolg amondolgen. et sp. nov., based on a fragmentary associated skeleton and co-occurring specimens from the middle unit of the upper Campanian Kaiparowits Formation of Grand Staircase–Escalante National Monument in southern Utah, USA. Phylogenetic analyses recoverB. amondolwithin Monstersauria, with two unique anatomical features: fused osteoderms on the jugal and the presence of autotomy septa on the distal caudal vertebrae. Critically,B. amondolis morphologically distinct from the problematic Late Cretaceous North American monstersaurPalaeosaniwa canadensis, whereas co-occurring monstersaur vertebrae and parietals from the Kaiparowits Formation (cf.P. canadensis) highlight a pressing need for a reassessment of this important, widespread taxon. These results offer new evidence that at least three lineages of distinct, large-bodied monstersaurian lizard were present on the palaeolandmass of Laramidia during the Campanian Stage. Importantly,B. amondolrepresents the most complete squamate recovered from late Campanian southern Laramidia and reveals key anatomical characteristics for future identification of isolated lizard fossil elements. 
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    Free, publicly-accessible full text available June 1, 2026
  3. Advanced air mobility (AAM) has introduced a new mode of air transportation that can be integrated, providing services including air taxis, which can quickly transport people and cargo from one place to another. However, urban airspace is already congested with commercial air traffic, so there is a need for an efficient and autonomous airspace management system. Establishing structured air corridors and enabling UAS-to-UAS (U2U) communications are essential to achieve autonomy. Air corridors are designated airspace primarily reserved for AAM traffic, which will streamline the movement of unmanned aircraft systems (UAS). Meanwhile, U2U communications facilitate efficient collision avoidance strategies (CAS). A key aspect of this system is the development of CAS, which requires advanced communication protocols to monitor traffic patterns and detect potential collisions. This paper explores designing and implementing CAS using U2U communications. Use cases for U2U communications include merging, minimum separation, information relay, collaborative sensing, and rerouting. All these use cases demand real-time solutions for managing traffic conflicts involving multiple UAS. The CAS discussed in this paper utilizes U2U communications to mitigate the risk of collisions in the airspace and demonstrates how U2U communications can assist in efficient AAM traffic management through simulations. 
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  4. Abstract We present high-resolution WIYN/NEID echelle spectroscopy (R ≈ 70,000) of the supernova (SN) 2023ixf in M101, obtained 1.51 to 18.51 days after explosion over nine epochs. Daily monitoring for the first 4 days after explosion shows narrow emission features (≤200 km s−1), exhibiting predominantly blueshifted velocities that rapidly weaken, broaden, and vanish in a manner consistent with radiative acceleration and the SN shock eventually overrunning or enveloping the full extent of the dense circumstellar medium (CSM). The most rapid evolution is in the Heiemission, which is visible on day 1.51 but disappears by day 2.62. We measure the maximum pre-SN speed of Heito be 25 5 + 0 ± 2 km s−1, where the error is attributable to the uncertainty in how much the Heihad already been radiatively accelerated and to measurement of the emission-line profile. The radiative acceleration of CSM is likely driven by the shock–CSM interaction, and the CSM is accelerated to ≥200 km s−1before being completely swept up by the SN shock to ∼2000 km s−1. We compare the observed spectra with spherically symmetric r1w6bHERACLES/CMFGENmodel spectra and find the line evolution to generally be consistent with radiative acceleration, optical depth effects, and evolving ionization state. The progenitor of SN 2023ixf underwent an enhanced mass-loss phase ≳4 yr prior to core collapse, creating a dense, asymmetric CSM region extending out to approximatelyrCSM = 3.7  × 1014(vshock/9500 km s−1) cm. 
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    Free, publicly-accessible full text available April 28, 2026
  5. ABSTRACT We present spectra of the supernova (SN) impostor AT 2016blu spanning over a decade. This transient exhibits quasi-periodic outbursts with an $$\sim$$113 d period, likely triggered by periastron encounters in an eccentric binary system where the primary star is a luminous blue variable (LBV). The overall spectrum remains fairly consistent during quiescence and eruptions, with subtle changes in line-profile shapes and other details. Some narrow emission features indicate contamination from a nearby H ii region in the host galaxy, NGC 4559. Broader H $$\alpha$$ profiles exhibit Lorentzian shapes with full width at half-maximum intensity (FWHM) values that vary significantly, showing no correlation with photometric outbursts or the 113 d phase. At some epochs, H $$\alpha$$ exhibits asymmetric profiles with a stronger redshifted wing, while broad and sometimes multicomponent P Cygni absorption features occasionally appear, but are again uncorrelated with brightness or phase. These P Cygni absorptions have high velocities compared to the FWHM of the H $$\alpha$$ emission line, perhaps suggesting that the absorption component is not in the LBV’s wind, but is instead associated with a companion. The lack of phase dependence in line-profile changes may point to interaction between a companion and a variable or inhomogeneous primary wind, in an orbit with only mild eccentricity. Recent photometric data indicate that AT 2016blu experienced its 21st outburst around 2023 May/June, as predicted based on its period. This type of quasi-periodic LBV remains poorly understood, but its spectra and erratic light curve resemble some pre-SN outbursts such as those of SN 2009ip. 
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  6. Context.Core-collapse supernovae (CCSNe) may have contributed a significant amount of dust in the early Universe. Freshly formed coolant molecules (e.g., CO) and warm dust can be found in CCSNe as early as ∼100 d after the SN explosion, allowing the study of their evolution with time series observations. Aims.Through study of the Type II SN 2023ixf, we aim to investigate the temporal evolution of the temperature, velocity, and mass of CO and compare them with other CCSNe, exploring their implications for the dust formation in CCSNe. From observations of velocity profiles of lines of other species (e.g., H and He), we also aim to characterize and understand the interaction of the SN ejecta with preexisting circumstellar material (CSM). Methods.We present a time series of 16 near-infrared spectra of SN 2023ixf from 9 to 307 d, taken with multiple instruments: Gemini/GNIRS, Keck/NIRES, IRTF/SpeX, and MMT/MMIRS. Results.The early (t ≲ 70 d) spectra indicate interaction between the expanding ejecta and nearby CSM. Att ≲ 20 d, intermediate-width line profiles corresponding to the ejecta-wind interaction are superposed on evolving broad P Cygni profiles. We find intermediate-width and narrow lines in the spectra untilt ≲ 70 d, which suggest continued CSM interaction. We also observe and discuss high-velocity absorption features in Hαand Hβline profiles formed by CSM interaction. The spectra contain CO first overtone emission between 199 and 307 d after the explosion. We modeled the CO emission and found the CO to have a higher velocity (3000–3500 km s−1) than that in Type II-pec SN 1987A (1800–2000 km s−1) during similar phases (t = 199 − 307 d) and a comparable CO temperature to SN 1987A. A flattened continuum at wavelengths greater than 1.5 μm accompanies the CO emission, suggesting that the warm dust is likely formed in the ejecta. The warm dust masses are estimated to be on the order of ∼10−5 M
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    Free, publicly-accessible full text available November 1, 2026
  7. The hypothalamus in the mammalian brain is responsible for regulating functions associated with survival and reproduction representing a complex set of highly interconnected, yet anatomically and functionally distinct, sub-regions. It remains unclear what factors drive the spatial organization of sub-regions within the hypothalamus. One potential factor may be structural connectivity of the network that promotes efficient function with well-connected sub-regions placed closer together geometrically, i.e., the strongest axonal signal transferred through the shortest geometrical distance. To empirically test for such efficiency, we use hypothalamic data derived from the Allen Mouse Brain Connectivity Atlas, which provides a structural connectivity map of mouse brain regions derived from a series of viral tracing experiments. Using both cost function minimization and comparison with a weighted, sphere-packing ensemble, we demonstrate that the sum of the distances between hypothalamic sub-regions are not close to the minimum possible distance, consistent with prior whole brain studies. However, if such distances are weighted by the inverse of the magnitude of the connectivity, their sum is among the lowest possible values. Specifically, the hypothalamus appears within the top 94th percentile of neural efficiencies of randomly packed configurations and within one standard deviation of the median efficiency when packings are optimized for maximal neural efficiency. Our results, therefore, indicate that a combination of geometrical and topological constraints help govern the structure of the hypothalamus. 
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  8. Abstract We present and analyze the extensive optical broadband photometry of the Type II SN 2023ixf up to 1 yr after explosion. We find that, when compared to two preexisting model grids, the bolometric light curve is consistent with drastically different combinations of progenitor and explosion properties. This may be an effect of known degeneracies in Type IIP light-curve models. We independently compute a large grid ofMESA+STELLAsingle-star progenitor and light-curve models with various zero-age main-sequence masses, mass-loss efficiencies, and convective efficiencies. Using the observed progenitor variability as an additional constraint, we select stellar models consistent with the pulsation period and explode them according to previously established scaling laws to match plateau properties. Our hydrodynamic modeling indicates that SN 2023ixf is most consistent with a moderate-energy ( E exp 7 × 1 0 50 erg) explosion of an initially high-mass red supergiant progenitor (≳16.5M) that lost a significant amount of mass in its prior evolution, leaving a low-mass hydrogen envelope (≲3M) at the time of explosion, with a radius ≳950Rand a synthesized56Ni mass of ≈0.068M. We posit that previous mass transfer in a binary system may have stripped the envelope of SN 2023ixf’s progenitor. The analysis method with pulsation period presented in this work offers a way to break degeneracies in light-curve modeling in the future, particularly with the upcoming Vera C. Rubin Observatory Legacy Survey of Space and Time, when a record of progenitor variability will be more common. 
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    Free, publicly-accessible full text available September 4, 2026
  9. Dececchi, T Alexander (Ed.)
    Fossil deposits with exceptional preservation (“lagerstätten”) provide important details not typically preserved in the fossil record, such that they hold an outsized influence on our understanding of biodiversity and evolution. In particular, the potential bias imparted by this so-called “lagerstätten effect” remains a critical, but underexplored aspect of reconstructing evolutionary relationships. Here, we quantify the amount of phylogenetic information available in the global fossil records of 1,327 species of non-avian theropod dinosaurs, Mesozoic birds, and fossil squamates (e.g., lizards, snakes, mosasaurs), and then compare the influence of lagerstätten deposits on phylogenetic information content and taxon selection in phylogenetic analyses to other fossil-bearing deposits. We find that groups that preserve a high amount of phylogenetic information in their global fossil record (e.g., non-avian theropods) are less vulnerable to a “lagerstätten effect” that leads to disproportionate representation of fossil taxa from one geologic unit in an evolutionary tree. Additionally, for each taxonomic group, we find comparable amounts of phylogenetic information in lagerstätten deposits, even though corresponding morphological character datasets vary greatly. Finally, we unexpectedly find that ancient sand dune deposits of the Late Cretaceous Gobi Desert of Mongolia and China exert an anomalously large influence on the phylogenetic information available in the squamate fossil record, suggesting a “lagerstätten effect” can be present in units not traditionally considered lagerstätten. These results offer a phylogenetics-based lens through which to examine the effects of exceptional fossil preservation on biological patterns through time and space, and invites further quantification of evolutionary information in the rock record. 
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  10. The brain primarily relies on glycolysis for mitochondrial respiration but switches to alternative fuels such as ketone bodies (KBs) when less glucose is available. Neuronal KB uptake, which does not rely on glucose transporter 4 (GLUT4) or insulin, has shown promising clinical applicability in alleviating the neurological and cognitive effects of disorders with hypometabolic components. However, the specific mechanisms by which such interventions affect neuronal functions are poorly understood. In this study, we pharmacologically blocked GLUT4 to investigate the effects of exogenous KB D-ꞵ-hydroxybutyrate (D-ꞵHb) on mouse brain metabolism during acute insulin resistance (AIR). We found that both AIR and D-ꞵHb had distinct impacts across neuronal compartments: AIR decreased synaptic activity and long-term potentiation (LTP) and impaired axonal conduction, synchronization, and action potential (AP) properties, while D-ꞵHb rescued neuronal functions associated with axonal conduction, synchronization, and LTP. 
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